STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc138Uncharacterized protein. (616 aa)    
Predicted Functional Partners:
ccdc186
Si:ch211-225b10.4.
      
 0.619
pibf1
Progesterone immunomodulatory binding factor 1.
   
 
 0.588
ccdc22
Coiled-coil domain containing 22.
      
 0.566
rabl6
RAB, member RAS oncogene family-like 6b.
      
 0.566
vps54
VPS54 subunit of GARP complex.
      
 0.566
fopnl
Fgfr1op N-terminal like.
      
 0.566
vps52
VPS52 subunit of GARP complex.
      
 0.566
vps51
VPS51 subunit of GARP complex.
      
 0.566
vps33b
VPS33B late endosome and lysosome associated; Belongs to the STXBP/unc-18/SEC1 family.
      
 0.565
ENSTRUP00000054854
Uncharacterized protein.
      
 0.564
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.