STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc138Uncharacterized protein. (616 aa)    
Predicted Functional Partners:
ccdc186
Si:ch211-225b10.4.
      
 0.862
rabl6
RAB, member RAS oncogene family-like 6b.
      
 0.777
pibf1
Progesterone immunomodulatory binding factor 1.
   
 
 0.757
vps53
VPS53 subunit of GARP complex.
      
 0.754
ccdc22
Coiled-coil domain containing 22.
      
 0.741
fopnl
Fgfr1op N-terminal like.
      
 0.733
vps52
VPS52 subunit of GARP complex.
      
 0.720
vps51
VPS51 subunit of GARP complex.
      
 0.719
vps54
VPS54 subunit of GARP complex.
      
 0.716
vps33b
VPS33B late endosome and lysosome associated; Belongs to the STXBP/unc-18/SEC1 family.
      
 0.715
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.