STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101075171Interferon regulatory factor. (308 aa)    
Predicted Functional Partners:
mdm2
MDM2 proto-oncogene.
    
 0.987
stub1
STIP1 homology and U-Box containing protein 1.
    
 
 0.958
stat1
Signal transducer and activator of transcription.
   
 0.941
irf2
Interferon regulatory factor.
  
0.916
LOC101071462
Signal transducer and activator of transcription.
   
 0.883
LOC101070643
E1A binding protein p300 a.
    
 0.849
ENSTRUP00000064066
E1A binding protein p300 b.
    
 0.849
LOC115248448
E1A binding protein p300 b.
    
 0.849
stat3
Signal transducer and activator of transcription.
   
 0.837
LOC101068057
Signal transducer and activator of transcription.
   
 0.831
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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