STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vsx1Visual system homeobox 1 homolog, chx10-like. (337 aa)    
Predicted Functional Partners:
atoh7
Atonal bHLH transcription factor 7.
   
  
 0.622
scgn
Secretagogin, EF-hand calcium binding protein.
      
 0.565
isl1
ISL LIM homeobox 1.
   
  
 0.537
tomm34
Translocase of outer mitochondrial membrane 34.
      
 0.506
ptf1a
Pancreas associated transcription factor 1a.
   
  
 0.502
rbpms2
RNA binding protein, mRNA processing factor 2b.
   
  
 0.497
lnx2
Ligand of numb-protein X 2a.
      
 0.457
LOC101070083
Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
   
  
 0.456
pou4f2
POU domain protein.
   
  
 0.446
LOC101066813
Syntaxin 3A; Belongs to the syntaxin family.
    
 
 0.434
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.