STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vsx1Visual system homeobox 1 homolog, chx10-like. (337 aa)    
Predicted Functional Partners:
atoh7
Atonal bHLH transcription factor 7.
      
 0.700
pou4f2
POU domain protein.
   
  
 0.596
isl1
ISL LIM homeobox 1.
   
  
 0.566
tomm34
Translocase of outer mitochondrial membrane 34.
      
 0.564
rbpms2
RNA binding protein, mRNA processing factor 2b.
      
 0.561
H2SJJ2_TAKRU
Basic helix-loop-helix family, member e23.
   
 
 0.547
scgn
Secretagogin, EF-hand calcium binding protein.
      
 0.545
ptf1a
Pancreas associated transcription factor 1a.
      
 0.542
lnx2
Ligand of numb-protein X 2a.
      
 0.540
foxn4
Forkhead box N4.
      
 0.538
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.