STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hmbox1Homeobox containing 1. (499 aa)    
Predicted Functional Partners:
LOC101062820
Uncharacterized protein.
      
 0.745
ercc1
Excision repair cross-complementation group 1.
      
 0.737
meiob
Methionine sulfoxide reductase B1b.
      
 0.702
tert
Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.
      
 0.605
rfc5
Replication factor C (activator 1) 5.
      
 0.593
nabp1
Nucleic acid binding protein 1a.
      
 0.586
zbtb48
Zinc finger and BTB domain containing 48.
    
 
 0.551
map3k4
Mitogen-activated protein kinase kinase kinase 4.
      
 0.543
ENSTRUP00000077867
Mitogen-activated protein kinase kinase kinase 4.
      
 0.543
fam160b1
Family with sequence similarity 160 member B1.
      
 0.518
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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