STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxc13Homeobox protein Hox-C13a; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Abd-B homeobox family. (315 aa)    
Predicted Functional Partners:
LOC101064324
Forkhead box N1.
   
 
 0.705
lef1
Lymphoid enhancer-binding factor 1.
    
 
 0.574
LOC101062032
Homeobox domain-containing protein.
   
  
0.512
LOC101071476
RAB27B, member RAS oncogene family.
   
  
 0.491
six2
SIX homeobox 2.
      
 0.475
rnf41
Ring finger protein 41.
      
 0.452
RAB9A
RAB9A, member RAS oncogene family.
      
 0.445
gdf11
Growth differentiation factor 11.
      
 0.437
foxn4
Forkhead box N4.
   
 
 0.422
pkp2
Plakophilin 2.
      
 0.420
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: low (14%) [HD]