Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sdf4Stromal cell derived factor 4. (361 aa)    
Predicted Functional Partners:
LOC101075296
Parvalbumin-7-like.
      
 0.853
calb2
Calbindin 2b.
      
 0.601
ENSTRUP00000080510
Calretinin-like isoform X1.
      
 0.601
B3galt6
Galactosylxylosylprotein 3-beta-galactosyltransferase.
      
 0.591
tubd1
Tubulin, delta 1; Belongs to the tubulin family.
      
 0.564
LOC101063225
Calcium binding protein 2b.
      
 0.557
LOC101062625
Somatostatin.
      
 0.524
ENSTRUP00000070580
annotation not available
    
 
 0.520
LOC101065443-2
Protein S100; Belongs to the S-100 family.
    
 
 0.520
pvalb
Parvalbumin 7; Belongs to the parvalbumin family.
      
 0.519
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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