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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
commd3COMM domain containing 3. (193 aa)    
Predicted Functional Partners:
rnf2
Ring finger protein 2.
   
 0.819
LOC101061529
Zgc:158376.
   
 0.641
LOC101071235
Lysine (K)-specific demethylase 2Ba.
   
 0.616
LOC101063174
Lysine (K)-specific demethylase 2Aa.
   
 0.616
LOC101075964
Lysine (K)-specific demethylase 2Bb.
   
 0.616
kdm2a
Lysine (K)-specific demethylase 2Ab.
   
 0.616
rybp
RING1 and YY1 binding protein b.
    
 0.601
LOC101070310
YY1 associated factor 2.
    
 0.601
YAF2
YY1 associated factor 2.
    
 0.601
setd7
SET domain containing 7, histone lysine methyltransferase.
    
 0.542
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.