STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDZD7PDZ domain-containing protein. (885 aa)    
Predicted Functional Partners:
LOC101075888
Sidoreflexin.
   
  
 0.661
LOC101061127
Sidoreflexin.
   
  
 0.661
ccar1
Cell division cycle and apoptosis regulator 1.
      
 0.653
mat2b
Methionine adenosyltransferase 2 subunit beta; Regulatory subunit of S-adenosylmethionine synthetase 2, an enzyme that catalyzes the formation of S-adenosylmethionine from methionine and ATP. Regulates MAT2A catalytic activity by changing its kinetic properties, increasing its affinity for L-methionine.
      
 0.653
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
   
 0.609
traf3ip1
TNF receptor-associated factor 3 interacting protein 1.
    
 0.589
ift172
Uncharacterized protein.
    
 0.587
cask
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
    
 0.585
ift88
Intraflagellar transport 88 homolog.
   
 0.567
LOC101065727
Protocadherin-related 15b.
    
 
 0.565
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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