Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VCPIP1Deubiquitinating protein VCIP135. (1112 aa)    
Predicted Functional Partners:
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.931
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.913
nsfl1c
NSFL1 (p97) cofactor (p47).
    
 
 0.868
ubxn2a
UBX domain protein 2A.
    
 
 0.867
faf2
Fas associated factor family member 2.
    
 
 0.779
ubxn7
UBX domain protein 7.
   
 
 0.775
UBXN7
UBX domain protein 7.
   
 
 0.775
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.740
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 
 0.726
FAAP100
Uncharacterized protein.
    
 
 0.726
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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