Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ENSTRUP00000010653Vesicle transport through interaction with t-SNAREs 1B. (160 aa)    
Predicted Functional Partners:
stx8
Syntaxin 8.
   
 0.998
vamp4
Vesicle-associated membrane protein 4.
   
 0.992
napg
NSF attachment protein gamma.
   
 0.978
stx16
Syntaxin 16; Belongs to the syntaxin family.
   
 0.976
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
0.971
stx7
Syntaxin 7-like; Belongs to the syntaxin family.
   
 0.971
LOC101071071
Vesicle-associated membrane protein 8 (endobrevin).
   
 0.969
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.960
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
    
 0.956
LOC101073835
Syntaxin 12; Belongs to the syntaxin family.
   
 0.949
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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