Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrtm1Leucine rich repeat transmembrane neuronal 1. (521 aa)    
Predicted Functional Partners:
nrxn1
Neurexin 1b.
   
 0.783
clstn3
Calsyntenin 3.
   
  
 0.722
rab12
RAB12, member RAS oncogene family.
    
  0.721
trappc10
Trafficking protein particle complex 10.
      
 0.706
nlgn1
COesterase domain-containing protein.
   
 
 0.699
LOC101079387
Neurexin 3b.
   
 0.692
nrxn3
Uncharacterized protein.
   
 0.692
LOC101078917
Uncharacterized protein.
   
 0.658
LOC101065004
Neurexin 2.
   
 0.658
kctd2
Potassium channel tetramerization domain containing 2.
    
 0.618
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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