Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rbm27RNA binding motif protein 27. (1027 aa)    
Predicted Functional Partners:
zfc3h1
zf-C3H1 domain-containing protein.
   
 0.903
mtrex
Mtr4 exosome RNA helicase.
   
 0.836
pabpn1
Poly(A) binding protein, nuclear 1.
    
 0.831
PABPN1L
Poly(A) binding protein nuclear 1 like, cytoplasmic.
    
 0.831
PAPOLG
Poly(A) polymerase gamma.
   
 
 0.797
YTHDC2
YTH domain containing 2.
   
 0.768
rnps1
RNA binding protein S1, serine-rich domain.
    
 0.730
LOC101074911
RNA-binding protein with serine-rich domain 1-B-like isoform X1.
    
 0.730
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.725
Zc3h3
Zinc finger CCCH domain-containing protein 3 isoform X1.
   
 
 0.718
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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