STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm27RNA binding motif protein 27. (1027 aa)    
Predicted Functional Partners:
zfc3h1
zf-C3H1 domain-containing protein.
   
 
 0.694
pabpn1
Poly(A) binding protein, nuclear 1.
    
 
 0.564
PABPN1L
Poly(A) binding protein nuclear 1 like, cytoplasmic.
    
 
 0.564
mtrex
Mtr4 exosome RNA helicase.
   
 
 0.511
rnps1
RNA binding protein S1, serine-rich domain.
    
 
 0.464
LOC101074911
RNA-binding protein with serine-rich domain 1-B-like isoform X1.
    
 
 0.464
skiv2l
SKI2 homolog, superkiller viralicidic activity 2-like.
   
 
 0.452
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.