Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC115252685FinTRIM family, member 83. (570 aa)    
Predicted Functional Partners:
LOC115252686
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 
 0.745
trim2
Tripartite motif containing 2a.
      
 0.562
trim9
Tripartite motif containing 9.
    
 0.558
becn1
Beclin 1.
    
 0.518
ube2i
Ubiquitin-conjugating enzyme E2Ia; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.460
trim13
Tripartite motif containing 13.
      
 0.455
trim59
Tripartite motif containing 59.
      
 0.447
ralbp1
RalA binding protein 1.
      
 0.443
DDX41
DEAD-box helicase 41.
    
 0.434
LOC101071239
Keratin, type 1, gene c5; Belongs to the intermediate filament family.
  
     0.429
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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