LOC101075588 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101075588

Lysophosphatidic acid receptor 1; Belongs to the G-protein coupled receptor 1 family. (352 aa)

Predicted Functional Partners:

LOC101078555

0.973

lpar2

0.973

LOC101061293

0.940

LOC101080197

0.940

LOC101064713

0.940

LOC101068452

0.940

LOC101079922

0.940

LOC101071876

0.937

gna12

0.937

LOC101065558

0.937

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101061293	LOC101064713	ENSTRUP00000017288	ENSTRUP00000041180	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b.	Uncharacterized protein.	0.599
LOC101061293	LOC101065558	ENSTRUP00000017288	ENSTRUP00000046184	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b.	Uncharacterized protein.	0.658
LOC101061293	LOC101068452	ENSTRUP00000017288	ENSTRUP00000053052	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b.	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3.	0.605
LOC101061293	LOC101071876	ENSTRUP00000017288	ENSTRUP00000028944	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b.	Guanine nucleotide binding protein (G protein), alpha 13b.	0.659
LOC101061293	LOC101075588	ENSTRUP00000017288	ENSTRUP00000010927	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b.	Lysophosphatidic acid receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.940
LOC101061293	LOC101079922	ENSTRUP00000017288	ENSTRUP00000079170	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b.	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2a.	0.544
LOC101061293	LOC101080197	ENSTRUP00000017288	ENSTRUP00000026269	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b.	Uncharacterized protein.	0.599
LOC101061293	gna12	ENSTRUP00000017288	ENSTRUP00000029080	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b.	G protein subunit alpha 12.	0.660
LOC101064713	LOC101061293	ENSTRUP00000041180	ENSTRUP00000017288	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b.	0.599
LOC101064713	LOC101065558	ENSTRUP00000041180	ENSTRUP00000046184	Uncharacterized protein.	Uncharacterized protein.	0.655
LOC101064713	LOC101068452	ENSTRUP00000041180	ENSTRUP00000053052	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3.	0.605
LOC101064713	LOC101071876	ENSTRUP00000041180	ENSTRUP00000028944	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 13b.	0.657
LOC101064713	LOC101075588	ENSTRUP00000041180	ENSTRUP00000010927	Uncharacterized protein.	Lysophosphatidic acid receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.940
LOC101064713	LOC101079922	ENSTRUP00000041180	ENSTRUP00000079170	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2a.	0.599
LOC101064713	LOC101080197	ENSTRUP00000041180	ENSTRUP00000026269	Uncharacterized protein.	Uncharacterized protein.	0.542
LOC101064713	gna12	ENSTRUP00000041180	ENSTRUP00000029080	Uncharacterized protein.	G protein subunit alpha 12.	0.660
LOC101065558	LOC101061293	ENSTRUP00000046184	ENSTRUP00000017288	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b.	0.658
LOC101065558	LOC101064713	ENSTRUP00000046184	ENSTRUP00000041180	Uncharacterized protein.	Uncharacterized protein.	0.655
LOC101065558	LOC101068452	ENSTRUP00000046184	ENSTRUP00000053052	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3.	0.655
LOC101065558	LOC101071876	ENSTRUP00000046184	ENSTRUP00000028944	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 13b.	0.900