Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101071873Peripherin 2b (retinal degeneration, slow). (343 aa)    
Predicted Functional Partners:
LOC778011
Rhodopsin.
   
 
 0.778
rho
Rhodopsin.
   
 
 0.778
LOC101063222
RING-type domain-containing protein.
    
 
 0.756
LOC101067553
PNPLA domain-containing protein.
      
 0.746
LOC619285
Rhodopsin.
   
 
 0.631
LOC101079163
Rhodopsin.
   
 
 0.631
LOC101061072
Uncharacterized protein.
      
 0.599
dusp6
Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.
      
 0.558
pnpla8
Patatin-like phospholipase domain containing 8.
      
 0.554
LOC101065054
Calcium-independent phospholipase A2-gamma-like.
      
 0.554
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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