Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
etfrf1LYR motif containing 5a; Belongs to the complex I LYR family. (85 aa)    
Predicted Functional Partners:
ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 
 0.973
etfa
Electron transfer flavoprotein subunit alpha.
   
 
 0.964
LOC101062466
Electron transfer flavoprotein subunit beta.
    
 
 0.937
mrpl46
Mitochondrial ribosomal protein L46.
    
   0.902
lyrm1
LYR motif containing 1; Belongs to the complex I LYR family.
      
 0.878
lyrm7
LYR motif containing 7; Belongs to the complex I LYR family.
   
  
 0.710
Lyrm4
Uncharacterized protein; Belongs to the complex I LYR family.
      
 0.710
sdhaf3
Succinate dehydrogenase complex assembly factor 3.
      
 0.704
LYRM2
Uncharacterized protein; Belongs to the complex I LYR family.
      
 0.518
ENSTRUP00000054403
MID1 interacting protein 1.
      
 0.516
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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