LOC101062274 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101062274

Uncharacterized protein. (282 aa)

Predicted Functional Partners:

sp1

0.837

e2f1

0.596

LOC101077059

0.591

H2SEL7_TAKRU

0.590

aptx

0.572

spata20

0.561

nosip

0.541

tubg1

0.507

TIPARP

0.500

spata18

0.476

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2SEL7_TAKRU	LOC101062274	ENSTRUP00000010848	ENSTRUP00000011008	Exostoses (multiple) 1c; Belongs to the glycosyltransferase 47 family.	Uncharacterized protein.	0.590
LOC101062274	H2SEL7_TAKRU	ENSTRUP00000011008	ENSTRUP00000010848	Uncharacterized protein.	Exostoses (multiple) 1c; Belongs to the glycosyltransferase 47 family.	0.590
LOC101062274	LOC101077059	ENSTRUP00000011008	ENSTRUP00000048623	Uncharacterized protein.	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	0.591
LOC101062274	TIPARP	ENSTRUP00000011008	ENSTRUP00000052361	Uncharacterized protein.	TCDD inducible poly(ADP-ribose) polymerase.	0.500
LOC101062274	aptx	ENSTRUP00000011008	ENSTRUP00000024613	Uncharacterized protein.	Aprataxin; DNA-binding protein involved in single-strand DNA break repair, double-strand DNA break repair and base excision repair. Resolves abortive DNA ligation intermediates formed either at base excision sites, or when DNA ligases attempt to repair non-ligatable breaks induced by reactive oxygen species. Catalyzes the release of adenylate groups covalently linked to 5'-phosphate termini, resulting in the production of 5'-phosphate termini that can be efficiently rejoined. Also able to hydrolyze adenosine 5'-monophosphoramidate (AMP- NH(2)) and diadenosine tetraphosphate (AppppA), b [...]	0.572
LOC101062274	e2f1	ENSTRUP00000011008	ENSTRUP00000028242	Uncharacterized protein.	E2F transcription factor 1.	0.596
LOC101062274	nosip	ENSTRUP00000011008	ENSTRUP00000024546	Uncharacterized protein.	Nitric oxide synthase-interacting protein; Negatively regulates nitric oxide production by inducing nitric oxide synthase translocation to actin cytoskeleton and inhibiting its enzymatic activity; Belongs to the NOSIP family.	0.541
LOC101062274	sp1	ENSTRUP00000011008	ENSTRUP00000036587	Uncharacterized protein.	Sp1 transcription factor.	0.837
LOC101062274	spata18	ENSTRUP00000011008	ENSTRUP00000038075	Uncharacterized protein.	Spermatogenesis associated 18.	0.476
LOC101062274	spata20	ENSTRUP00000011008	ENSTRUP00000044021	Uncharacterized protein.	Spermatogenesis associated 20.	0.561
LOC101062274	tubg1	ENSTRUP00000011008	ENSTRUP00000037747	Uncharacterized protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.507
LOC101077059	LOC101062274	ENSTRUP00000048623	ENSTRUP00000011008	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	Uncharacterized protein.	0.591
LOC101077059	e2f1	ENSTRUP00000048623	ENSTRUP00000028242	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	E2F transcription factor 1.	0.435
LOC101077059	sp1	ENSTRUP00000048623	ENSTRUP00000036587	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	Sp1 transcription factor.	0.950
TIPARP	LOC101062274	ENSTRUP00000052361	ENSTRUP00000011008	TCDD inducible poly(ADP-ribose) polymerase.	Uncharacterized protein.	0.500
aptx	LOC101062274	ENSTRUP00000024613	ENSTRUP00000011008	Aprataxin; DNA-binding protein involved in single-strand DNA break repair, double-strand DNA break repair and base excision repair. Resolves abortive DNA ligation intermediates formed either at base excision sites, or when DNA ligases attempt to repair non-ligatable breaks induced by reactive oxygen species. Catalyzes the release of adenylate groups covalently linked to 5'-phosphate termini, resulting in the production of 5'-phosphate termini that can be efficiently rejoined. Also able to hydrolyze adenosine 5'-monophosphoramidate (AMP- NH(2)) and diadenosine tetraphosphate (AppppA), b [...]	Uncharacterized protein.	0.572
e2f1	LOC101062274	ENSTRUP00000028242	ENSTRUP00000011008	E2F transcription factor 1.	Uncharacterized protein.	0.596
e2f1	LOC101077059	ENSTRUP00000028242	ENSTRUP00000048623	E2F transcription factor 1.	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	0.435
e2f1	sp1	ENSTRUP00000028242	ENSTRUP00000036587	E2F transcription factor 1.	Sp1 transcription factor.	0.945
nosip	LOC101062274	ENSTRUP00000024546	ENSTRUP00000011008	Nitric oxide synthase-interacting protein; Negatively regulates nitric oxide production by inducing nitric oxide synthase translocation to actin cytoskeleton and inhibiting its enzymatic activity; Belongs to the NOSIP family.	Uncharacterized protein.	0.541