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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101067632Carbonic anhydrase XVI b. (1408 aa)    
Predicted Functional Partners:
cntn2
Contactin 2.
    
 0.667
LOC101065926
Uncharacterized protein.
    
 0.617
cntn1
Contactin 1b.
    
 0.617
LOC101079578
Contactin 3a, tandem duplicate 1.
    
 0.617
CNTN1
Contactin 1.
    
 0.617
LOC101066151
Contactin 4.
    
 0.617
LOC101079126
Contactin 3a, tandem duplicate 2.
    
 0.617
cntn5
Contactin 5.
    
 0.617
LOC101065697
Contactin 3b.
    
 0.617
fstl4
Follistatin-like 4.
   
 0.609
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.