Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC115250130Leucine rich repeat transmembrane neuronal 4 like 1. (566 aa)    
Predicted Functional Partners:
mysm1
Histone H2A deubiquitinase MYSM1.
   
 0.742
actl6a
Actin-like 6A; Belongs to the actin family.
   
 0.711
LOC101070741
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
   
 0.610
smarcb1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
   
 0.610
LOC101068543
Polybromo 1, like.
   
 0.600
LOC101080222
Polybromo 1.
   
 0.600
SMARCE1
HMG box domain-containing protein.
   
 0.584
LOC101066868
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.
   
 0.584
smarcd1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.
    
 0.563
ENSTRUP00000072951
annotation not available
    
 0.563
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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