ppa2 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ppa2

Pyrophosphatase (inorganic) 2. (358 aa)

Predicted Functional Partners:

lhpp

0.934

LOC101062668

0.906

atp5f1a

0.872

atp5po

0.872

atp5f1c

0.856

eef1g

0.829

atp6v0b

0.824

rpl13a

0.821

LOC101062972

0.800

atp5mc1

0.796

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101062668	LOC101062972	ENSTRUP00000032449	ENSTRUP00000072660	Pyrophosphatase (inorganic) 1a.	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.800
LOC101062668	atp5f1a	ENSTRUP00000032449	ENSTRUP00000049626	Pyrophosphatase (inorganic) 1a.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.872
LOC101062668	atp5f1c	ENSTRUP00000032449	ENSTRUP00000026723	Pyrophosphatase (inorganic) 1a.	ATP synthase subunit gamma.	0.856
LOC101062668	atp5mc1	ENSTRUP00000032449	ENSTRUP00000074385	Pyrophosphatase (inorganic) 1a.	Mitochondrial ATP synthase F0 complex subunit c isoform 1; Belongs to the ATPase C chain family.	0.796
LOC101062668	atp5po	ENSTRUP00000032449	ENSTRUP00000069814	Pyrophosphatase (inorganic) 1a.	ATP synthase peripheral stalk subunit OSCP.	0.872
LOC101062668	atp6v0b	ENSTRUP00000032449	ENSTRUP00000034797	Pyrophosphatase (inorganic) 1a.	ATPase H+ transporting V0 subunit b; Belongs to the V-ATPase proteolipid subunit family.	0.824
LOC101062668	eef1g	ENSTRUP00000032449	ENSTRUP00000059514	Pyrophosphatase (inorganic) 1a.	Eukaryotic translation elongation factor 1 gamma.	0.829
LOC101062668	lhpp	ENSTRUP00000032449	ENSTRUP00000025067	Pyrophosphatase (inorganic) 1a.	Phospholysine phosphohistidine inorganic pyrophosphate phosphatase.	0.934
LOC101062668	ppa2	ENSTRUP00000032449	ENSTRUP00000011141	Pyrophosphatase (inorganic) 1a.	Pyrophosphatase (inorganic) 2.	0.906
LOC101062668	rpl13a	ENSTRUP00000032449	ENSTRUP00000073743	Pyrophosphatase (inorganic) 1a.	Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.	0.821
LOC101062972	LOC101062668	ENSTRUP00000072660	ENSTRUP00000032449	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Pyrophosphatase (inorganic) 1a.	0.800
LOC101062972	atp5f1a	ENSTRUP00000072660	ENSTRUP00000049626	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.993
LOC101062972	atp5f1c	ENSTRUP00000072660	ENSTRUP00000026723	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATP synthase subunit gamma.	0.988
LOC101062972	atp5mc1	ENSTRUP00000072660	ENSTRUP00000074385	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Mitochondrial ATP synthase F0 complex subunit c isoform 1; Belongs to the ATPase C chain family.	0.468
LOC101062972	atp5po	ENSTRUP00000072660	ENSTRUP00000069814	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATP synthase peripheral stalk subunit OSCP.	0.979
LOC101062972	atp6v0b	ENSTRUP00000072660	ENSTRUP00000034797	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATPase H+ transporting V0 subunit b; Belongs to the V-ATPase proteolipid subunit family.	0.999
LOC101062972	lhpp	ENSTRUP00000072660	ENSTRUP00000025067	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Phospholysine phosphohistidine inorganic pyrophosphate phosphatase.	0.676
LOC101062972	ppa2	ENSTRUP00000072660	ENSTRUP00000011141	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Pyrophosphatase (inorganic) 2.	0.800
LOC101062972	rpl13a	ENSTRUP00000072660	ENSTRUP00000073743	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.	0.699
atp5f1a	LOC101062668	ENSTRUP00000049626	ENSTRUP00000032449	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Pyrophosphatase (inorganic) 1a.	0.872