Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rdh12Retinol dehydrogenase 12. (322 aa)    
Predicted Functional Partners:
aldh1a2
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
  
 0.949
LOC101063989
Cytochrome P450, family 26, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family.
   
 
 0.932
raldh3
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
  
 0.927
LOC101074060
Cytochrome P450, family 27, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family.
   
 
 0.923
aox1
Aldehyde oxidase 6.
     
 0.909
pnpla4
PNPLA domain-containing protein.
   
 
 0.908
LOC101062884
Si:ch1073-13h15.3.
    
 0.709
LOC101065125
Uncharacterized protein.
    
 0.709
lrat
Lecithin retinol acyltransferase a.
     
 0.695
DGAT1
O-acyltransferase.
   
 
 0.692
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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