Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LARP4BUncharacterized protein. (725 aa)    
Predicted Functional Partners:
rack1
Receptor for activated C kinase 1.
    
 
 0.720
zc3h12b
Zinc finger CCCH-type containing 12B.
      
 0.631
FLNB
Filamin B.
    
   0.572
LOC101077561
Filamin C, gamma a (actin binding protein 280).
    
   0.572
LACTB2
Lactamase beta 2.
      
 0.546
LOC101069242
Potassium inwardly-rectifying channel, subfamily J, member 9.
      
 0.546
larp6
La ribonucleoprotein domain family, member 6a.
      
 0.519
ncoa2
Nuclear receptor coactivator 2.
      
 0.514
ccdc102a
Coiled-coil domain containing 102A.
      
 0.494
sarnp
SAP domain-containing protein.
      
 0.493
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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