Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prelpProline/arginine-rich end leucine-rich repeat protein. (392 aa)    
Predicted Functional Partners:
lrr1
Zgc:77287.
  
   
 0.828
lum
Lumican.
  
 
0.750
bgn
Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.
  
 
0.703
LOC101078700
Aggrecan a.
    
 0.703
LOC101069140
Aggrecan b.
    
 0.703
LOC115246761
Asporin.
  
 
0.689
ENSTRUP00000086666
Osteoglycin, paralog a.
   
 
0.663
LOC101075481
Fibromodulin a.
  
 
0.659
LOC101080150
Osteoglycin, paralog a.
   
 
0.657
LOC101075579
Osteoglycin, paralog b.
 
 
 
0.655
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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