Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101075258Zgc:113307. (364 aa)    
Predicted Functional Partners:
lrr1
Zgc:77287.
  
   
 0.549
LOC101074018
Leucine rich repeat containing 18b.
  
     0.495
ENSTRUP00000051585
Leucine rich repeat containing 18a.
  
     0.494
Lrrc10b
Uncharacterized protein.
  
     0.492
H2TC77_TAKRU
Uncharacterized protein.
  
     0.492
lrrc39
Leucine rich repeat containing 39.
  
     0.487
H2S799_TAKRU
Uncharacterized protein.
  
     0.485
ENSTRUP00000075313
annotation not available
  
     0.485
lrrc28
Leucine rich repeat containing 28.
  
 
  0.483
LOC101072798
Si:zfos-323e3.4.
  
     0.473
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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