Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
depdc1DEP domain containing 1a. (827 aa)    
Predicted Functional Partners:
cyfip1
Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family.
     
 0.581
aspm
ASH domain-containing protein.
   
  
 0.573
kif14
Kinesin family member 14; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
  
 0.567
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.542
ccnb1
Cyclin B1; Belongs to the cyclin family.
   
  
 0.526
kif20a
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
  
 0.515
LOC101062117
Rho GTPase activating protein 19.
   
 
 0.498
LOC101061710
Rho-GAP domain-containing protein.
   
 
 0.498
LOC101076287
Ras homolog gene family, member Gd.
     
  0.477
LOC101073689
Ras homolog family member Gb.
     
  0.477
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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