STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cdadc1Cytidine and dCMP deaminase domain containing 1. (508 aa)    
Predicted Functional Partners:
morn5
MORN repeat containing 5.
      
 0.885
tyms
Thymidylate synthetase.
  
 
 0.759
tk1
Thymidine kinase.
  
 
 0.752
llph
LLP homolog, long-term synaptic facilitation factor.
      
 0.735
nhlrc2
NHL repeat containing 2.
      
 0.708
ccdc25
Coiled-coil domain containing 25.
      
 0.699
itm2b
Integral membrane protein 2Bb.
      
 0.695
TMEM74
Transmembrane protein 74.
      
 0.630
c1qtnf2
C1q and TNF related 2.
   
  
 0.625
upp2
Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.
     
 0.619
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.