Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
usp12Ubiquitin specific peptidase 12a; Belongs to the peptidase C19 family. (372 aa)    
Predicted Functional Partners:
wdr48
WD repeat domain 48b.
    
 0.953
LOC101077945
DM1 locus, WD repeat containing.
   
 0.879
wdr20
WD repeat domain 20a.
   
 0.879
LOC101068631
WD repeat domain 20b.
   
 0.842
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.775
rps27a
Ribosomal protein S27a.
    
  0.742
LOC101067852
Uncharacterized protein.
    
 0.739
LOC101080066
Androgen receptor.
    
 0.739
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.681
Fancm
ERCC4 domain-containing protein.
     
 0.620
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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