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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nsd2Nuclear receptor binding SET domain protein 2. (1353 aa)    
Predicted Functional Partners:
mre11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
   
 0.702
plod1
Fe2OG dioxygenase domain-containing protein.
    
 0.686
plod2
Fe2OG dioxygenase domain-containing protein.
    
 0.686
camkmt
Calmodulin-lysine N-methyltransferase.
     
 0.682
rad50
RAD50 homolog, double strand break repair protein.
   
 0.674
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.669
LOC105416732
Mediator of DNA damage checkpoint protein 1.
   
 0.658
paxip1
PAX interacting (with transcription-activation domain) protein 1.
   
 0.658
atm
TAN domain-containing protein.
   
 0.655
rps27a
Ribosomal protein S27a.
   
  0.652
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.