Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101063299BRO1 domain and CAAX motif containing. (410 aa)    
Predicted Functional Partners:
LOC101070321
Charged multivesicular body protein 5a.
   
 0.773
LOC101075600
Charged multivesicular body protein 4C.
   
 0.588
chmp4b
Charged multivesicular body protein 4Bb.
   
 0.588
LOC101072878
Uncharacterized protein.
   
 0.588
LOC101067383
Charged multivesicular body protein 6a.
    
 0.574
chmp6
Charged multivesicular body protein 6.
    
 0.574
VPS4B
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
   
 0.573
vps4a
Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.
   
 0.573
vps4b
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
   
 0.573
LOC101078992
UEV domain-containing protein.
   
 0.569
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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