clrn1 protein (Takifugu rubripes) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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co-expression

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[Homology]

Score

clrn1

Clarin 1. (232 aa)

Predicted Functional Partners:

LOC101065208

0.654

wdr5

0.553

LOC101065574

0.527

LOC101066299

0.518

LOC105419521

0.518

cib3

0.516

cib2

0.516

LOC101077154

0.446

LOC101077248

0.446

anks4b

0.446

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101065208	LOC101066299	ENSTRUP00000013547	ENSTRUP00000000469	Usher syndrome 1C.	Whirlin a.	0.763
LOC101065208	LOC101077154	ENSTRUP00000013547	ENSTRUP00000011813	Usher syndrome 1C.	Usher syndrome 1Gb (autosomal recessive).	0.943
LOC101065208	LOC101077248	ENSTRUP00000013547	ENSTRUP00000031108	Usher syndrome 1C.	Usher syndrome 1Ga (autosomal recessive).	0.967
LOC101065208	LOC105419521	ENSTRUP00000013547	ENSTRUP00000067792	Usher syndrome 1C.	Whirlin-like isoform X1.	0.763
LOC101065208	anks4b	ENSTRUP00000013547	ENSTRUP00000041202	Usher syndrome 1C.	Ankyrin repeat and sterile alpha motif domain containing 4B.	0.943
LOC101065208	cib2	ENSTRUP00000013547	ENSTRUP00000078385	Usher syndrome 1C.	Calcium and integrin binding family member 2.	0.603
LOC101065208	cib3	ENSTRUP00000013547	ENSTRUP00000027104	Usher syndrome 1C.	Calcium and integrin binding family member 3.	0.603
LOC101065208	clrn1	ENSTRUP00000013547	ENSTRUP00000011643	Usher syndrome 1C.	Clarin 1.	0.654
LOC101065574	clrn1	ENSTRUP00000079417	ENSTRUP00000011643	Neural cell adhesion molecule L1; Neural cell adhesion molecule involved in the dynamics of cell adhesion and in the generation of transmembrane signals at tyrosine kinase receptors. During brain development, critical in multiple processes, including neuronal migration, axonal growth and fasciculation, and synaptogenesis. In the mature brain, plays a role in the dynamics of neuronal structure and function, including synaptic plasticity.	Clarin 1.	0.527
LOC101066299	LOC101065208	ENSTRUP00000000469	ENSTRUP00000013547	Whirlin a.	Usher syndrome 1C.	0.763
LOC101066299	LOC101077154	ENSTRUP00000000469	ENSTRUP00000011813	Whirlin a.	Usher syndrome 1Gb (autosomal recessive).	0.506
LOC101066299	LOC101077248	ENSTRUP00000000469	ENSTRUP00000031108	Whirlin a.	Usher syndrome 1Ga (autosomal recessive).	0.506
LOC101066299	LOC105419521	ENSTRUP00000000469	ENSTRUP00000067792	Whirlin a.	Whirlin-like isoform X1.	0.558
LOC101066299	anks4b	ENSTRUP00000000469	ENSTRUP00000041202	Whirlin a.	Ankyrin repeat and sterile alpha motif domain containing 4B.	0.506
LOC101066299	cib2	ENSTRUP00000000469	ENSTRUP00000078385	Whirlin a.	Calcium and integrin binding family member 2.	0.453
LOC101066299	cib3	ENSTRUP00000000469	ENSTRUP00000027104	Whirlin a.	Calcium and integrin binding family member 3.	0.453
LOC101066299	clrn1	ENSTRUP00000000469	ENSTRUP00000011643	Whirlin a.	Clarin 1.	0.518
LOC101077154	LOC101065208	ENSTRUP00000011813	ENSTRUP00000013547	Usher syndrome 1Gb (autosomal recessive).	Usher syndrome 1C.	0.943
LOC101077154	LOC101066299	ENSTRUP00000011813	ENSTRUP00000000469	Usher syndrome 1Gb (autosomal recessive).	Whirlin a.	0.506
LOC101077154	LOC105419521	ENSTRUP00000011813	ENSTRUP00000067792	Usher syndrome 1Gb (autosomal recessive).	Whirlin-like isoform X1.	0.506