Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lmnb1Lamin B1; Belongs to the intermediate filament family. (584 aa)    
Predicted Functional Partners:
casp6
Caspase 6, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.
    
 0.965
lmnb2
Lamin B2; Belongs to the intermediate filament family.
   
 
 
0.905
LOC101064143
Lamin L3; Belongs to the intermediate filament family.
     
 
0.900
LOC101065337
Peptidase S1 domain-containing protein.
    
  0.900
LOC101070721
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
  0.900
lemd3
LEM domain containing 3.
    
 0.773
LOC101063389
Uncharacterized protein.
    
 0.767
sun1
Sad1 and UNC84 domain containing 1.
    
 0.703
LOC101064932
Uncharacterized protein.
   
 0.699
banf1
Barrier to autointegration factor 1.
    
 0.695
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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