STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101061100Tpd52 like 2a. (199 aa)    
Predicted Functional Partners:
LOC101066435
Tumor protein D52.
   
   0.745
tpd52l1
Tpd52 like 1.
    
   0.736
gabpa
GA binding protein transcription factor subunit alpha.
    
   0.641
gabpb2
GA binding protein transcription factor subunit beta 2a.
    
  0.638
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
     
 0.518
nub1
Negative regulator of ubiquitin-like proteins 1.
      
 0.447
snapin
SNAP associated protein.
   
 
  0.435
pyroxd2
Pyridine nucleotide-disulphide oxidoreductase domain 2.
      
 0.427
sh3glb2
SH3-domain GRB2-like endophilin B2b.
   
   0.410
LOC101072556
SH3-domain GRB2-like endophilin B1a.
   
   0.410
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.