Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2SH83_TAKRUIF rod domain-containing protein; Belongs to the intermediate filament family. (316 aa)    
Predicted Functional Partners:
DCX
Doublecortin.
      
 0.891
prph
Peripherin; Belongs to the intermediate filament family.
    
   0.886
H2V4V2_TAKRU
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
      
 0.880
LOC101072320
Glial fibrillary acidic protein; Belongs to the intermediate filament family.
    
 
 0.879
cdk5
Cyclin-dependent kinase 5.
    
 
 0.789
LOC101079512
Myelin basic protein b.
      
 0.783
des
Desmin b; Belongs to the intermediate filament family.
    
 
 0.779
LOC101070536
Notochord granular surface; Belongs to the intermediate filament family.
    
 
 0.779
H2UEI6_TAKRU
Desmin a; Belongs to the intermediate filament family.
    
 
 0.779
vim
Vimentin like; Belongs to the intermediate filament family.
    
 
 0.779
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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