Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dhx16DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1053 aa)    
Predicted Functional Partners:
gpkow
G patch domain and KOW motifs.
    
 0.998
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
 0.979
ppil4
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
   
 0.975
xab2
XPA binding protein 2.
   
 0.973
cwc22
CWC22 spliceosome associated protein homolog.
   
 0.972
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
   
  0.972
sf3b2
Splicing factor 3b, subunit 2.
   
 0.970
cwc27
CWC27 spliceosome associated cyclophilin.
   
 0.968
rnf113a
Ring finger protein 113A.
   
 0.962
bud13
BUD13 homolog.
   
 0.950
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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