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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tapbplTAP binding protein like. (434 aa)    
Predicted Functional Partners:
tapbp
TAP binding protein (tapasin), tandem duplicate 2.
  
 
0.920
LOC101077331
Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP).
   
 
 0.866
LOC101070568
Transporter associated with antigen processing, subunit type t, teleost specific.
   
 
 0.820
LOC101066072
Transporter associated with antigen processing, subunit type a.
   
 
 0.820
pdia3
Protein disulfide-isomerase.
     
 0.774
calr
Calreticulin.
     
 0.735
LOC101074526
Calreticulin.
     
 0.720
LOC101067334
Protein disulfide-isomerase.
     
 0.669
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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