Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101072918Uncharacterized protein; Belongs to the peptidase S1 family. (665 aa)    
Predicted Functional Partners:
bmp5
Bone morphogenetic protein 5.
     
 0.691
LOC105418295
C1q domain-containing protein.
   
 0.653
colec11
Collectin sub-family member 11.
    
 0.648
COLEC10
Collectin subfamily member 10.
    
 0.648
LOC101061147
C1q domain-containing protein.
   
 0.606
LOC101067572
Uncharacterized protein.
   
  
 0.546
CD109
CD109 antigen-like.
   
 0.528
LOC101065354
Complement 4B (Chido blood group).
   
 0.519
ppp4r1
WRNPLPNID domain-containing protein.
    
   0.499
LOC101061845
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.474
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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