Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101077154Usher syndrome 1Gb (autosomal recessive). (478 aa)    
Predicted Functional Partners:
LOC101065208
Usher syndrome 1C.
   
 0.943
LOC101079017
Si:ch73-194h10.2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.638
PLEKHH3
Pleckstrin homology, MyTH4 and FERM domain containing H3.
   
 0.638
ENSTRUP00000056597
MyTH4 domain-containing protein.
   
 0.638
Myo15b
Myosin XVB.
   
 0.638
LOC101080179
Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.638
H2V7V0_TAKRU
Uncharacterized protein.
   
 0.637
GRXCR2
Glutaredoxin and cysteine rich domain containing 2.
     
 0.527
Adgrv1
Uncharacterized protein.
    
 
 0.521
PLA2G12B
Phospholipase A2 group XIIB.
   
 0.512
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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