ccnq protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ccnq

Cyclin Q; Belongs to the cyclin family. (263 aa)

Predicted Functional Partners:

cdk9

0.863

cdk13

0.784

cdk12

0.784

cdk10

0.720

stx8

0.713

supt5h

0.711

ENSTRUP00000071314

0.711

supt4h1

0.708

NCBP1

0.705

noc4l

0.699

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000071314	NCBP1	ENSTRUP00000071314	ENSTRUP00000073353	annotation not available	Nuclear cap binding protein subunit 1.	0.684
ENSTRUP00000071314	ccnq	ENSTRUP00000071314	ENSTRUP00000011831	annotation not available	Cyclin Q; Belongs to the cyclin family.	0.711
ENSTRUP00000071314	cdk12	ENSTRUP00000071314	ENSTRUP00000069106	annotation not available	Cyclin-dependent kinase 12 isoform X1.	0.882
ENSTRUP00000071314	cdk13	ENSTRUP00000071314	ENSTRUP00000033911	annotation not available	Cyclin-dependent kinase 13.	0.882
ENSTRUP00000071314	cdk9	ENSTRUP00000071314	ENSTRUP00000022568	annotation not available	Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.	0.970
ENSTRUP00000071314	supt4h1	ENSTRUP00000071314	ENSTRUP00000078655	annotation not available	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.985
NCBP1	ENSTRUP00000071314	ENSTRUP00000073353	ENSTRUP00000071314	Nuclear cap binding protein subunit 1.	annotation not available	0.684
NCBP1	ccnq	ENSTRUP00000073353	ENSTRUP00000011831	Nuclear cap binding protein subunit 1.	Cyclin Q; Belongs to the cyclin family.	0.705
NCBP1	cdk12	ENSTRUP00000073353	ENSTRUP00000069106	Nuclear cap binding protein subunit 1.	Cyclin-dependent kinase 12 isoform X1.	0.639
NCBP1	cdk13	ENSTRUP00000073353	ENSTRUP00000033911	Nuclear cap binding protein subunit 1.	Cyclin-dependent kinase 13.	0.639
NCBP1	cdk9	ENSTRUP00000073353	ENSTRUP00000022568	Nuclear cap binding protein subunit 1.	Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.	0.676
NCBP1	supt4h1	ENSTRUP00000073353	ENSTRUP00000078655	Nuclear cap binding protein subunit 1.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.774
NCBP1	supt5h	ENSTRUP00000073353	ENSTRUP00000005469	Nuclear cap binding protein subunit 1.	Transcription elongation factor SPT5.	0.684
ccnq	ENSTRUP00000071314	ENSTRUP00000011831	ENSTRUP00000071314	Cyclin Q; Belongs to the cyclin family.	annotation not available	0.711
ccnq	NCBP1	ENSTRUP00000011831	ENSTRUP00000073353	Cyclin Q; Belongs to the cyclin family.	Nuclear cap binding protein subunit 1.	0.705
ccnq	cdk10	ENSTRUP00000011831	ENSTRUP00000009877	Cyclin Q; Belongs to the cyclin family.	Cyclin-dependent kinase 10; Belongs to the protein kinase superfamily.	0.720
ccnq	cdk12	ENSTRUP00000011831	ENSTRUP00000069106	Cyclin Q; Belongs to the cyclin family.	Cyclin-dependent kinase 12 isoform X1.	0.784
ccnq	cdk13	ENSTRUP00000011831	ENSTRUP00000033911	Cyclin Q; Belongs to the cyclin family.	Cyclin-dependent kinase 13.	0.784
ccnq	cdk9	ENSTRUP00000011831	ENSTRUP00000022568	Cyclin Q; Belongs to the cyclin family.	Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.	0.863
ccnq	noc4l	ENSTRUP00000011831	ENSTRUP00000060420	Cyclin Q; Belongs to the cyclin family.	Nucleolar complex associated 4 homolog.	0.699