STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
barx1BARX homeobox 1. (234 aa)    
Predicted Functional Partners:
chm
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
      
 0.568
nkx3-2
NK3 homeobox 2.
   
  
0.522
SYDE1
Synapse defective Rho GTPase homolog 1.
      
 0.495
sfrp2
Secreted frizzled-related protein 2.
   
 
 0.483
ercc4
Excision repair cross-complementation group 4.
     
 0.482
prdm16
Si:ch211-263k4.2.
    
 0.468
prdm5
Zinc finger protein.
    
 0.465
msx1
Homeobox domain-containing protein.
   
  
0.443
LOC101079976
ISL LIM homeobox 2b.
   
 
 0.425
LOC101069608
Bone morphogenetic protein 16.
      
 0.425
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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