Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
abca7Zgc:172302. (2351 aa)    
Predicted Functional Partners:
RAC1
Uncharacterized protein.
    
 0.914
LOC101067160
Rac family small GTPase 1b.
    
 0.914
nr1h3
Nuclear receptor subfamily 1, group H, member 3.
    
 0.904
abca1
ATP-binding cassette, sub-family A (ABC1), member 1A.
  
  
0.903
apoA-IV4
Apolipoprotein A-IV4.
    
 0.847
apoa-iv3
Uncharacterized protein.
    
 0.847
c2cd3
C2 domain containing 3 centriole elongation regulator.
      
 0.697
apoa-i
Uncharacterized protein.
    
 0.675
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
  
 0.626
LOC101073582
Nuclear receptor subfamily 1, group H, member 5.
    
 0.602
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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