nploc4 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

nploc4

NPL4 homolog, ubiquitin recognition factor. (634 aa)

Predicted Functional Partners:

ufd1

0.997

vcp

0.995

Fancm

0.970

ENSTRUP00000083969

0.965

ubxn7

0.964

UBXN7

0.964

fancf

0.961

fancg

0.961

fancc

0.960

FANCA

0.960

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000083969	FANCA	ENSTRUP00000083969	ENSTRUP00000080350	annotation not available	Fanconi anemia group A protein.	0.999
ENSTRUP00000083969	Fancm	ENSTRUP00000083969	ENSTRUP00000024507	annotation not available	ERCC4 domain-containing protein.	0.999
ENSTRUP00000083969	fancc	ENSTRUP00000083969	ENSTRUP00000037064	annotation not available	FA complementation group C.	0.999
ENSTRUP00000083969	fancf	ENSTRUP00000083969	ENSTRUP00000030768	annotation not available	FA complementation group F.	0.999
ENSTRUP00000083969	fancg	ENSTRUP00000083969	ENSTRUP00000048285	annotation not available	Uncharacterized protein.	0.999
ENSTRUP00000083969	nploc4	ENSTRUP00000083969	ENSTRUP00000011853	annotation not available	NPL4 homolog, ubiquitin recognition factor.	0.965
FANCA	ENSTRUP00000083969	ENSTRUP00000080350	ENSTRUP00000083969	Fanconi anemia group A protein.	annotation not available	0.999
FANCA	Fancm	ENSTRUP00000080350	ENSTRUP00000024507	Fanconi anemia group A protein.	ERCC4 domain-containing protein.	0.999
FANCA	fancc	ENSTRUP00000080350	ENSTRUP00000037064	Fanconi anemia group A protein.	FA complementation group C.	0.999
FANCA	fancf	ENSTRUP00000080350	ENSTRUP00000030768	Fanconi anemia group A protein.	FA complementation group F.	0.999
FANCA	fancg	ENSTRUP00000080350	ENSTRUP00000048285	Fanconi anemia group A protein.	Uncharacterized protein.	0.999
FANCA	nploc4	ENSTRUP00000080350	ENSTRUP00000011853	Fanconi anemia group A protein.	NPL4 homolog, ubiquitin recognition factor.	0.960
Fancm	ENSTRUP00000083969	ENSTRUP00000024507	ENSTRUP00000083969	ERCC4 domain-containing protein.	annotation not available	0.999
Fancm	FANCA	ENSTRUP00000024507	ENSTRUP00000080350	ERCC4 domain-containing protein.	Fanconi anemia group A protein.	0.999
Fancm	fancc	ENSTRUP00000024507	ENSTRUP00000037064	ERCC4 domain-containing protein.	FA complementation group C.	0.999
Fancm	fancf	ENSTRUP00000024507	ENSTRUP00000030768	ERCC4 domain-containing protein.	FA complementation group F.	0.999
Fancm	fancg	ENSTRUP00000024507	ENSTRUP00000048285	ERCC4 domain-containing protein.	Uncharacterized protein.	0.999
Fancm	nploc4	ENSTRUP00000024507	ENSTRUP00000011853	ERCC4 domain-containing protein.	NPL4 homolog, ubiquitin recognition factor.	0.970
UBXN7	nploc4	ENSTRUP00000065925	ENSTRUP00000011853	UBX domain protein 7.	NPL4 homolog, ubiquitin recognition factor.	0.964
UBXN7	ufd1	ENSTRUP00000065925	ENSTRUP00000057122	UBX domain protein 7.	Ubiquitin recognition factor in ER associated degradation 1.	0.991