Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tor3aTorsin family 3, member A. (365 aa)    
Predicted Functional Partners:
LOC101078265
Uncharacterized protein.
   
 
 0.774
ENSTRUP00000075566
Uncharacterized protein.
   
 
 0.774
Rft1
Oligosaccharide translocation protein RFT1.
      
 0.744
mrps18a
Mitochondrial ribosomal protein S18A.
      
 0.733
sec16a
Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.
      
 0.702
LOC101076764
Uncharacterized protein.
      
 0.700
Cep350
Centrosomal protein 350.
      
 0.654
nup153
Nucleoporin 153.
      
 0.640
clpx
Caseinolytic mitochondrial matrix peptidase chaperone subunit b.
      
 0.625
epdr1
Ependymin related 1.
      
 0.560
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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