STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101061331Nucleolar protein 4-like a. (682 aa)    
Predicted Functional Partners:
TEX9
Testis-expressed protein 9 isoform X3.
    
   0.733
ska3
Spindle and kinetochore associated complex subunit 3.
    
   0.624
fbxl13
F-box and leucine-rich repeat protein 13.
   
 
 0.609
commd7
COMM domain containing 7.
      
 0.515
fam185a
Family with sequence similarity 185 member A.
      
 0.512
ralgapb
Ral GTPase activating protein, beta subunit (non-catalytic).
   
 0.492
LOC101078234
Neuronal pentraxin 2a.
   
  
 0.488
LOC101071950-2
Oxysterol-binding protein; Belongs to the OSBP family.
      
 0.476
LOC101066137
C-terminal-binding protein 1-like isoform X1.
    
   0.473
CTBP2
C-terminal binding protein 2; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
   0.473
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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