STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101071108Rho guanine nucleotide exchange factor (GEF) 19. (967 aa)    
Predicted Functional Partners:
cdc42se1
CDC42 small effector 1.
      
 0.481
ect2l
Coiled-coil domain containing 28A.
     
 0.414
LOC101076147
Uncharacterized protein.
    
 0.404
LOC101070117
Ras homolog gene family, member Aa.
    
 0.404
LOC101064166
Uncharacterized protein.
    
 0.404
LOC101071942
Uncharacterized protein.
    
 0.404
LOC101077509
Ras homolog family member Ca.
    
 0.404
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.