STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spsb3SplA/ryanodine receptor domain and SOCS box containing 3a. (373 aa)    
Predicted Functional Partners:
cul5
Cullin 5a; Belongs to the cullin family.
    
 0.971
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.941
cand1
Cullin-associated and neddylation-dissociated 1.
     
  0.761
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.745
mrps34
Mitochondrial ribosomal protein S34.
   
  
 0.732
LOC101069587
SplA/ryanodine receptor domain and SOCS box containing 1.
     
 0.727
LOC101065477
SplA/ryanodine receptor domain and SOCS box containing 4a.
     
 0.727
LOC105419690
SPRY domain-containing SOCS box protein 4-like.
     
 0.727
ankrd29
Ankyrin repeat domain 29.
     
 0.698
mycbp2
MYC binding protein 2.
    
 
 0.697
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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