mbtps2 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

mbtps2

Membrane-bound transcription factor peptidase, site 2. (529 aa)

Predicted Functional Partners:

mbtps1

0.880

creb3l1

0.875

srebf1

0.873

srebf2

0.873

LOC101078409

0.870

LOC101065014

0.815

ENSTRUP00000087570

0.815

atf6

0.794

LOC101073153

0.794

TMEM38B

0.743

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000087570	creb3l1	ENSTRUP00000087570	ENSTRUP00000017229	Cyclic AMP-responsive element-binding protein 3-like protein 3-A.	cAMP responsive element binding protein 3-like 1.	0.435
ENSTRUP00000087570	mbtps1	ENSTRUP00000087570	ENSTRUP00000056047	Cyclic AMP-responsive element-binding protein 3-like protein 3-A.	Membrane-bound transcription factor peptidase, site 1.	0.813
ENSTRUP00000087570	mbtps2	ENSTRUP00000087570	ENSTRUP00000012250	Cyclic AMP-responsive element-binding protein 3-like protein 3-A.	Membrane-bound transcription factor peptidase, site 2.	0.815
LOC101065014	creb3l1	ENSTRUP00000045973	ENSTRUP00000017229	cAMP responsive element binding protein 3-like 3a.	cAMP responsive element binding protein 3-like 1.	0.435
LOC101065014	mbtps1	ENSTRUP00000045973	ENSTRUP00000056047	cAMP responsive element binding protein 3-like 3a.	Membrane-bound transcription factor peptidase, site 1.	0.813
LOC101065014	mbtps2	ENSTRUP00000045973	ENSTRUP00000012250	cAMP responsive element binding protein 3-like 3a.	Membrane-bound transcription factor peptidase, site 2.	0.815
LOC101073153	atf6	ENSTRUP00000063130	ENSTRUP00000060768	BZIP domain-containing protein.	Activating transcription factor 6.	0.900
LOC101073153	creb3l1	ENSTRUP00000063130	ENSTRUP00000017229	BZIP domain-containing protein.	cAMP responsive element binding protein 3-like 1.	0.448
LOC101073153	mbtps1	ENSTRUP00000063130	ENSTRUP00000056047	BZIP domain-containing protein.	Membrane-bound transcription factor peptidase, site 1.	0.825
LOC101073153	mbtps2	ENSTRUP00000063130	ENSTRUP00000012250	BZIP domain-containing protein.	Membrane-bound transcription factor peptidase, site 2.	0.794
LOC101078409	mbtps2	ENSTRUP00000022328	ENSTRUP00000012250	Sorting and assembly machinery component 50 homolog, like.	Membrane-bound transcription factor peptidase, site 2.	0.870
TMEM38B	creb3l1	ENSTRUP00000022301	ENSTRUP00000017229	Transmembrane protein 38B.	cAMP responsive element binding protein 3-like 1.	0.637
TMEM38B	mbtps2	ENSTRUP00000022301	ENSTRUP00000012250	Transmembrane protein 38B.	Membrane-bound transcription factor peptidase, site 2.	0.743
atf6	LOC101073153	ENSTRUP00000060768	ENSTRUP00000063130	Activating transcription factor 6.	BZIP domain-containing protein.	0.900
atf6	creb3l1	ENSTRUP00000060768	ENSTRUP00000017229	Activating transcription factor 6.	cAMP responsive element binding protein 3-like 1.	0.452
atf6	mbtps1	ENSTRUP00000060768	ENSTRUP00000056047	Activating transcription factor 6.	Membrane-bound transcription factor peptidase, site 1.	0.825
atf6	mbtps2	ENSTRUP00000060768	ENSTRUP00000012250	Activating transcription factor 6.	Membrane-bound transcription factor peptidase, site 2.	0.794
atf6	srebf2	ENSTRUP00000060768	ENSTRUP00000080294	Activating transcription factor 6.	Sterol regulatory element binding transcription factor 2.	0.423
creb3l1	ENSTRUP00000087570	ENSTRUP00000017229	ENSTRUP00000087570	cAMP responsive element binding protein 3-like 1.	Cyclic AMP-responsive element-binding protein 3-like protein 3-A.	0.435
creb3l1	LOC101065014	ENSTRUP00000017229	ENSTRUP00000045973	cAMP responsive element binding protein 3-like 1.	cAMP responsive element binding protein 3-like 3a.	0.435