STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2SIM5_TAKRUSi:ch1073-184j22.2. (213 aa)    
Predicted Functional Partners:
wdr90
WD repeat domain 90.
    
 
 0.625
mrm1
Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae).
   
  
 0.610
LOC101078548
Mitogen-activated protein kinase.
    
 0.586
H2SLX9_TAKRU
Enkurin domain-containing protein.
    
 
 0.569
efhb
Uncharacterized protein.
   
 
 0.565
LOC115250255
Sperm-associated antigen 8-like.
    
 
 0.562
ifi35
Interferon-induced protein 35.
    
 
 0.552
pacrg
PARK2 co-regulated.
    
 
 0.548
sdhaf2
Succinate dehydrogenase assembly factor 2, mitochondrial; Plays an essential role in the assembly of succinate dehydrogenase (SDH), an enzyme complex (also referred to as respiratory complex II) that is a component of both the tricarboxylic acid (TCA) cycle and the mitochondrial electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SDHA of the SDH catalytic dimer.
   
   0.539
fam183a
Family with sequence similarity 183 member A.
    
   0.538
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.