STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101068786Uncharacterized protein. (285 aa)    
Predicted Functional Partners:
ccdc90b
Coiled-coil domain containing 90B.
   
   0.866
micu1
Mitochondrial calcium uptake 1.
      
 0.745
micu3
Uncharacterized protein.
      
 0.699
MCUB
Mitochondrial calcium uniporter dominant negative beta subunit.
    
 
 0.547
mcu
Mitochondrial calcium uniporter.
    
 
 0.547
SLC8B1
Solute carrier family 8 member B1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.
      
 0.512
smdt1
Single-pass membrane protein with aspartate-rich tail 1a.
      
 0.491
smdt1-2
Single-pass membrane protein with aspartate-rich tail 1b.
      
 0.491
micu2
Mitochondrial calcium uptake 2.
      
 0.443
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.