Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
homezHomeobox and leucine zipper encoding a. (657 aa)    
Predicted Functional Partners:
LRIT1
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.
    
 0.836
H2S664_TAKRU
Spalt-like transcription factor 3b.
      
 0.612
LOC105417758
Decapping mRNA 1B.
    
 
 0.581
zhx3
Zinc fingers and homeoboxes 3.
    
 
 0.558
smyd1
SET and MYND domain containing 1b.
   
  0.534
LOC101065744
Uncharacterized protein.
   
  0.534
LOC101076930
Potassium channel tetramerization domain containing 5a.
      
 0.527
LOC101077178
Si:dkeyp-77h1.4.
  
     0.516
bccip
Protein BCCIP homolog; Belongs to the BCP1 family.
      
 0.498
LOC101074660
Cardiomyopathy associated 5.
    
 0.496
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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