Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pde12Phosphodiesterase 12. (590 aa)    
Predicted Functional Partners:
cnot9
CCR4-NOT transcription complex subunit 9.
    
 0.825
cnot4
CCR4-NOT transcription complex, subunit 4a.
    
 0.821
cnot8
CCR4-NOT transcription complex, subunit 8.
   
 0.754
LOC101064780
CCR4-NOT transcription complex, subunit 7.
   
 0.754
cnot2
CCR4-NOT transcription complex, subunit 2.
    
 0.741
LOC101069703
NOT2_3_5 domain-containing protein.
    
 0.741
gpatch11
G patch domain containing 11.
    
 0.739
LOC101076133
CCR4-NOT transcription complex, subunit 3b.
    
 0.713
cnot3
CCR4-NOT transcription complex, subunit 3a.
    
 0.713
yrdc
YrdC N(6)-threonylcarbamoyltransferase domain containing.
 
    
 0.708
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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